PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00020987001

Common Name

GSBRNA2T00020987001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 362aa MW: 39750.6 Da PI: 7.7902

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00020987001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	160	215	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ GSBRNA2T00020987001 160 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 215 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.682	157	217	IPR017930	Myb domain
SuperFamily	SSF46689	1.66E-17	158	218	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	158	218	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-27	160	215	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	162	213	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
NKISVEVYRQ QLEAYRENSN NSNQSVVARP VLEEFIPLRN QPEKENNKGN NWMTTAQLWS 60 QPETKPKNID PTTDQSPKDE LASSPKLGHF DVKQRNGGGA FLPFSKEKTL PELALSTEVK 120 RVSPANEHTN DHDCNGESII NGSNNNNNNN SSTTSQSNRK ARRCWSPDLH RRFVQALQML 180 GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSPSPQTSSG QGPHLVVLGG 240 IWVPPEYTTA HGGTPTLYHH QVQNHQGNAA AQPPPHFCSS QEFYTARPPP QQLHHHHFQT 300 CNGSSADGSA STDSAHQLTD SAADDGKSLE SGGGERKGLA ALREESGNQS NINGSEITLK 360 F*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

NKISVEVYRQ QLEAYRENSN NSNQSVVARP VLEEFIPLRN QPEKENNKGN NWMTTAQLWS  60
QPETKPKNID PTTDQSPKDE LASSPKLGHF DVKQRNGGGA FLPFSKEKTL PELALSTEVK  120
RVSPANEHTN DHDCNGESII NGSNNNNNNN SSTTSQSNRK ARRCWSPDLH RRFVQALQML  180
GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSPSPQTSSG QGPHLVVLGG  240
IWVPPEYTTA HGGTPTLYHH QVQNHQGNAA AQPPPHFCSS QEFYTARPPP QQLHHHHFQT  300
CNGSSADGSA STDSAHQLTD SAADDGKSLE SGGGERKGLA ALREESGNQS NINGSEITLK  360
F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013687047.1	0.0	PREDICTED: uncharacterized protein LOC106391028
TrEMBL	A0A078JYW0	0.0	A0A078JYW0_BRANA; BnaAnng39110D protein (Fragment)
STRING	Bra026548.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7134	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-166	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]